CDS

Accession Number TCMCG007C00116
gbkey CDS
Protein Id XP_033138120.1
Location join(418303..418341,418447..418558,418642..418703,419232..419438,419523..419627,419724..420671,420757..421107)
Gene LOC103844616
GeneID 103844616
Organism Brassica rapa

Protein

Length 607aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_033282229.1
Definition protein LHY isoform X2 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category K
Description SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko03000        [VIEW IN KEGG]
KEGG_ko ko:K12133        [VIEW IN KEGG]
EC -
KEGG_Pathway ko04712        [VIEW IN KEGG]
map04712        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0001067        [VIEW IN EMBL-EBI]
GO:0001101        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003700        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006970        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0007623        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0009266        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009409        [VIEW IN EMBL-EBI]
GO:0009416        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009648        [VIEW IN EMBL-EBI]
GO:0009651        [VIEW IN EMBL-EBI]
GO:0009719        [VIEW IN EMBL-EBI]
GO:0009723        [VIEW IN EMBL-EBI]
GO:0009725        [VIEW IN EMBL-EBI]
GO:0009733        [VIEW IN EMBL-EBI]
GO:0009737        [VIEW IN EMBL-EBI]
GO:0009739        [VIEW IN EMBL-EBI]
GO:0009751        [VIEW IN EMBL-EBI]
GO:0009753        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010035        [VIEW IN EMBL-EBI]
GO:0010038        [VIEW IN EMBL-EBI]
GO:0010228        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0033993        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042493        [VIEW IN EMBL-EBI]
GO:0042752        [VIEW IN EMBL-EBI]
GO:0042754        [VIEW IN EMBL-EBI]
GO:0043433        [VIEW IN EMBL-EBI]
GO:0044092        [VIEW IN EMBL-EBI]
GO:0044212        [VIEW IN EMBL-EBI]
GO:0046677        [VIEW IN EMBL-EBI]
GO:0046686        [VIEW IN EMBL-EBI]
GO:0048511        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048571        [VIEW IN EMBL-EBI]
GO:0048573        [VIEW IN EMBL-EBI]
GO:0048574        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051090        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065009        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0097305        [VIEW IN EMBL-EBI]
GO:0140110        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901700        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGATACTAATACATCCGGAGATGAGTTATTAACCAAGGCAAGAAAGCCGTATACTATTACAAAGCAGCGGGAACGATGGACAGAGGATGAGCATGATAGGTTTCTTGAAGCCTTGAGGCTTTATGGAAGGGCCTGGCAACGTATAGAAGAACATATTGGGACAAAGACTGCTGTTCAGATCAGAAGTCATGCACAAAAGTTCTTCACAAAGCTGGAGAAAGAGGCAGAAGCTAAAGGCATTCCAGTTTGTCAAGCTCTCAACATAGAGATCCCACCTCCTCGTCCTAAAAGGAAACCCAATACTCCTTATCCTCGTAAACCTGGCAATAATGGCCCATCAGCAAAACTTGTATCCTCAGCCTCTTCTTCACAATGTAACCAGGCTTTCTTGGATTTGGAAAAAGTGCCCATCTCTGAGGAAACATCAAATGGGAAAGAAAATCAAGATGATAACTGCTCAGGGGTTTCTACTGTAAACAAGTGTCCCTTACCAAAGAAAGTAACTCAACCGTCTCTAAGAAAGGAAAGTGCCGATAATGGAACAAGTAAGAAGGCGTCAAATGTGAACACTCAGTTTCATCCCCCAGGTATGGTCTCTCAAGACTTGATGTTTTGTCCTATGGGAGATCGTGTTCACGGGCACGTGAATCTTCCAGCTACCACAACATCATGTGCTACTACAACTACTTCTCAACAGGCGTTTCCTGCGTGCCCTTCCCAGGATTCGTTTCTCCACTTCTCCTCTACTTTCCCCAATCTCATTATCTCAAGCCTCCTACAGAATCCTGCAGCTCATGCTGCAGCCACCTTCGCTGCTTCGGTCTGGCCCTATTCCAACGTCGGGAACTCGGGAGGAGATTCATCAACAACGCAAATGAGCTCCTCTCCTCCAAGTATAGCTGCCATCGCTGCTGCTACGGTAGCTGCCGCAACTGCTTGGTGGGCTTCTCATGGACTTATTCCTGTATGCGCTCCTCCTGCTCCAGTCACTTGCCTCCCATTACCAACCTTTGCAGTTCCAACTCAGGCTACGGATAAGATGGATACCGTTGAAAATGATCAAGAACCGCTGGAGAAACAAAACACAGCTCTGCAAGATAAAAACATGGCTTCAAAATCTCCATCTTCATCATCCGACGATTCAGAAGAGACTGGAGTAACCAAGCTAAACAACGCTGGCTCAAAGACAAATGGTGACAAGGAGGAAGTTGTTGCTGCTGCTTTGCATGATCCAAACGCTTCCCCAAAGAAAAAGCTGGTGGACCGCTCATCGTGTGGGTCAAACACACCTTCAGGGAGTGACGCGGAAACAGATGCCTTAGATAAGATGGAGAAAGATAACGAGGATGTGAAGGAGGCAGATCCAAACCAGCCAAGTGTTATTGAGTTGAGCAACCGTCGGAGTAAAATCAGAGACAACAACAACAACAACAACCAAACTACTGATTCGTGGAAAGAAGTCTCCCAAGGGGGTCGTAAAGCGTTTCAGGCTCTCTTTGCAAGACAGAGATTGCCTCAGAGCTTTTCACCTCCTCAAGTGGCTGCAGAGAATGTGAATGTGAATGGAAAGCAAAGTGATACGTCAATGCCGATGGCTCCTGATCTCATCAAGGTTCAAGACTCTTGTGATGCGGACCAAGAGAGTGGAGTAGTAATGATAGGTGATGGAACGGGGAAGAGCCTTAAAACGAGACAGTCAGGGTTTAAGCCATACAAGAGATGTTCAATGGAGGCGAAAGAGAGCCAAGATGGGAACGCAAACAATGAAAGCGATGAAAAAGTCTGCAAGAGGATTCGATTGGAAGGAGAAACTTCAACATAA
Protein:  
MDTNTSGDELLTKARKPYTITKQRERWTEDEHDRFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEAEAKGIPVCQALNIEIPPPRPKRKPNTPYPRKPGNNGPSAKLVSSASSSQCNQAFLDLEKVPISEETSNGKENQDDNCSGVSTVNKCPLPKKVTQPSLRKESADNGTSKKASNVNTQFHPPGMVSQDLMFCPMGDRVHGHVNLPATTTSCATTTTSQQAFPACPSQDSFLHFSSTFPNLIISSLLQNPAAHAAATFAASVWPYSNVGNSGGDSSTTQMSSSPPSIAAIAAATVAAATAWWASHGLIPVCAPPAPVTCLPLPTFAVPTQATDKMDTVENDQEPLEKQNTALQDKNMASKSPSSSSDDSEETGVTKLNNAGSKTNGDKEEVVAAALHDPNASPKKKLVDRSSCGSNTPSGSDAETDALDKMEKDNEDVKEADPNQPSVIELSNRRSKIRDNNNNNNQTTDSWKEVSQGGRKAFQALFARQRLPQSFSPPQVAAENVNVNGKQSDTSMPMAPDLIKVQDSCDADQESGVVMIGDGTGKSLKTRQSGFKPYKRCSMEAKESQDGNANNESDEKVCKRIRLEGETST